Index

A

accumulatedAverage() (in module ngawari.ftk) addFieldData() (in module ngawari.vtkfilters) addMagnitudeArray() (in module ngawari.vtkfilters) addNormalsToPolyData() (in module ngawari.vtkfilters) addNormalVelocities() (in module ngawari.vtkfilters) addNpArray() (in module ngawari.vtkfilters) addSuffixToName() (in module ngawari.fIO) adjustPointsCenterOfMassToOrigin() (in module ngawari.ftk) angleBetween2Vec() (in module ngawari.ftk), [1]

angleBetweenTwoVectors() (in module ngawari.vtkfilters) angleBetweenVecAndPlane() (in module ngawari.ftk) appendFiles() (in module ngawari.fIO) appendImageList() (in module ngawari.vtkfilters) appendPolyData() (in module ngawari.vtkfilters) appendPolyDataList() (in module ngawari.vtkfilters) appendUnstructured() (in module ngawari.vtkfilters) areVecsConsistent() (in module ngawari.ftk) areVecsMatching() (in module ngawari.ftk)

B

buildCircle3D() (in module ngawari.ftk), [1] buildContinuousLineByClosestPt() (in module ngawari.ftk) buildConvexHUll3D() (in module ngawari.ftk) buildCubeSource() (in module ngawari.vtkfilters), [1] buildCylinderSource() (in module ngawari.vtkfilters), [1] buildImplicitBox() (in module ngawari.vtkfilters) buildImplicitSphere() (in module ngawari.vtkfilters) buildPlaneCentredOnO() (in module ngawari.vtkfilters) buildPlaneCentredOnRoi() (in module ngawari.vtkfilters) buildPlaneCentredOnSphere() (in module ngawari.vtkfilters) buildPlanePtAndNorm() (in module ngawari.vtkfilters) buildPlaneSource() (in module ngawari.vtkfilters), [1]

buildPolydataFromXYZ() (in module ngawari.vtkfilters), [1] buildPolyLineBetweenTwoPoints() (in module ngawari.vtkfilters) buildPolyLineFromXYZ() (in module ngawari.vtkfilters), [1] buildPolyLineFromXYZ_spline() (in module ngawari.vtkfilters) buildPolyTrianglesAtCp() (in module ngawari.vtkfilters) buildPVD_WaterFallRestarts() (in module ngawari.fIO) buildRawImageData() (in module ngawari.vtkfilters), [1] buildRawImageDataFromOutline() (in module ngawari.vtkfilters) buildRawImageDataFromOutline_dims() (in module ngawari.vtkfilters) buildRawImageDataFromPolyData() (in module ngawari.vtkfilters) buildRotationMatrix() (in module ngawari.ftk), [1] buildSphereSource() (in module ngawari.vtkfilters), [1]

C

calculate_signed_area_2d() (in module ngawari.ftk) calculateBSA() (in module ngawari.ftk) calculateCurvature3Pts() (in module ngawari.ftk) calculateCurvature_D() (in module ngawari.ftk) calculateDerivativeOnLine_backwardDiff() (in module ngawari.ftk) calculatePlaneThreePoints() (in module ngawari.ftk) calculatePolyDataArea() (in module ngawari.vtkfilters) calculateSecondDerivativeOnLine() (in module ngawari.ftk) cart2Polar() (in module ngawari.ftk) cellToPointData() (in module ngawari.vtkfilters), [1] checkIfExtnPresent() (in module ngawari.fIO) circleFit2DErr() (in module ngawari.ftk) cleanData() (in module ngawari.vtkfilters), [1] clipDataByPlane() (in module ngawari.vtkfilters), [1] clippedByCircle() (in module ngawari.vtkfilters) clippedByPlane() (in module ngawari.vtkfilters)

clippedByPlaneClosedSurface() (in module ngawari.vtkfilters) clippedByPolyData() (in module ngawari.vtkfilters) clippedByScalar() (in module ngawari.vtkfilters), [1] clippedBySphere() (in module ngawari.vtkfilters) clipPlaneToROI() (in module ngawari.vtkfilters) clipVolumeToEightPolydataBoxes() (in module ngawari.vtkfilters) closeCurve() (in module ngawari.ftk) contourFilter() (in module ngawari.vtkfilters), [1] convert2DPointsTo3DCoordinateSystem() (in module ngawari.ftk) convexHull() (in module ngawari.ftk) copyData() (in module ngawari.vtkfilters), [1] copyPolyData() (in module ngawari.vtkfilters), [1] cosineDifferenceBetweenTwoMats() (in module ngawari.ftk) countFilesInDir() (in module ngawari.fIO), [1] countPointsInVti() (in module ngawari.vtkfilters) cumulativeDistanceAlongLine() (in module ngawari.ftk), [1]

D

decimateTris() (in module ngawari.vtkfilters) default() (ngawari.fIO.NumpyEncoder method) deg2rad() (in module ngawari.ftk), [1] delArray() (in module ngawari.vtkfilters), [1] delArraysExcept() (in module ngawari.vtkfilters) delCellsByEdgeLength() (in module ngawari.vtkfilters) delCellsByID() (in module ngawari.vtkfilters) deleteFieldData() (in module ngawari.vtkfilters) deleteFilesByPVD() (in module ngawari.fIO) detectDelimiter() (in module ngawari.fIO) diff() (in module ngawari.ftk)

distancePointToLineSegPerpendicular() (in module ngawari.ftk) distanceToPlane() (in module ngawari.ftk) distPointPoints() (in module ngawari.ftk), [1] distTwoPoints() (in module ngawari.ftk), [1] doesLinePiercePolygon() (in module ngawari.vtkfilters) doesLinePierceTri() (in module ngawari.vtkfilters) doesLinePierceTriangle() (in module ngawari.ftk) doesLineSegPierceTriangle() (in module ngawari.ftk) doesVectorPierceAnyTriangle() (in module ngawari.ftk) duplicateFieldData() (in module ngawari.vtkfilters) duplicateImageData() (in module ngawari.vtkfilters)

E

ensureClosedPolyIsClockwise() (in module ngawari.ftk) ensureScalarsSet() (in module ngawari.vtkfilters) extractCells() (in module ngawari.vtkfilters) extractContinuousSegFromPeriodic() (in module ngawari.ftk)

extractSelection() (in module ngawari.vtkfilters) extractStructuredSubGrid() (in module ngawari.vtkfilters) extractVOI() (in module ngawari.vtkfilters) extractVOI_fromFov() (in module ngawari.vtkfilters)

F

fcdot() (in module ngawari.ftk), [1] filterAnisotropicDiffusion() (in module ngawari.vtkfilters) filterBoolean() (in module ngawari.vtkfilters), [1] filterDilateErode() (in module ngawari.vtkfilters) filterExtractEdges() (in module ngawari.vtkfilters) filterExtractSurface() (in module ngawari.vtkfilters), [1] filterExtractTri() (in module ngawari.vtkfilters) filterFlipImageData() (in module ngawari.vtkfilters), [1] filterGaussianSmooth() (in module ngawari.vtkfilters) filterGetArrayValuesWithinSurface() (in module ngawari.vtkfilters) filterGetEnclosedPts() (in module ngawari.vtkfilters), [1] filterGetPointIDsInsideSurface() (in module ngawari.vtkfilters) filterGetPointsInsideSurface() (in module ngawari.vtkfilters), [1] filterGetPolydataInsideSurface() (in module ngawari.vtkfilters) filterImageGradient() (in module ngawari.vtkfilters) filterMaskImageBySurface() (in module ngawari.vtkfilters), [1] filterNullInsideSurface() (in module ngawari.vtkfilters) filterNullOutsideSurface() (in module ngawari.vtkfilters) filterResampleToDataset() (in module ngawari.vtkfilters)

filterResampleToImage() (in module ngawari.vtkfilters), [1] filterResampleToImage_BestAligned() (in module ngawari.vtkfilters) filterResliceImage() (in module ngawari.vtkfilters), [1] filterSurfaceToImageStencil() (in module ngawari.vtkfilters), [1] filterTransformPolyData() (in module ngawari.vtkfilters), [1] filterTriangulate() (in module ngawari.vtkfilters), [1] filterVtiMedian() (in module ngawari.vtkfilters), [1] filterVtpSpline() (in module ngawari.vtkfilters), [1] filterWarpPolydataByVectors() (in module ngawari.vtkfilters) findAndReplaceTextInFile() (in module ngawari.fIO) fit_ellipse_2d() (in module ngawari.ftk) fit_ellipse_3d() (in module ngawari.ftk) fitCircle2D() (in module ngawari.ftk) fitCircle3D() (in module ngawari.ftk) fitCircleRANSAC() (in module ngawari.ftk) fitCircleRANSAC3D_xyz() (in module ngawari.ftk) fitGaussianToData() (in module ngawari.ftk) fitPlane3DOptimize() (in module ngawari.ftk) fitPlaneToPointCloud_RANSAC() (in module ngawari.ftk), [1] fitPlaneToPoints() (in module ngawari.ftk), [1]

G

gaussianFunction() (in module ngawari.ftk) getAllFilesUnderDir() (in module ngawari.fIO), [1] getArray() (in module ngawari.vtkfilters), [1] getArrayAsNumpy() (in module ngawari.vtkfilters), [1] getArrayId() (in module ngawari.vtkfilters) getArrayNames() (in module ngawari.vtkfilters), [1] getAxesDirectionCosinesForNormal() (in module ngawari.vtkfilters) getBoundaryEdges() (in module ngawari.vtkfilters) getCellCenters() (in module ngawari.vtkfilters) getClosestFloat() (in module ngawari.ftk) getClosestInSortedList() (in module ngawari.ftk) getClosestPoint() (in module ngawari.ftk) getConnectedCellIds() (in module ngawari.vtkfilters) getConnectedRegionAll() (in module ngawari.vtkfilters) getConnectedRegionClosestToX() (in module ngawari.vtkfilters) getConnectedRegionClosestToX_UnStruct() (in module ngawari.vtkfilters) getConnectedRegionContaining() (in module ngawari.vtkfilters) getConnectedRegionLargest() (in module ngawari.vtkfilters) getConnectedRegionMinDistToX() (in module ngawari.vtkfilters) getDataCutByPlane() (in module ngawari.vtkfilters) getDataWithThreshold() (in module ngawari.vtkfilters) getDimsResOriginFromOutline() (in module ngawari.vtkfilters) getEdges() (in module ngawari.vtkfilters) getFieldData() (in module ngawari.vtkfilters) getFieldDataDict() (in module ngawari.vtkfilters) getFieldDataNames() (in module ngawari.vtkfilters) getIDOfClosestFloat() (in module ngawari.ftk) getIdOfClosestFloat() (in module ngawari.ftk) getIDOfClosestPoint() (in module ngawari.ftk) getIdOfPointClosestToX() (in module ngawari.ftk), [1] getIDsOfClosestPoints() (in module ngawari.ftk) getIDsOfFartherestPoints() (in module ngawari.ftk)

getImageX() (in module ngawari.vtkfilters) getLoopSubDivided() (in module ngawari.vtkfilters) getMaximumBounds() (in module ngawari.vtkfilters), [1] getMaxsMinsInflections() (in module ngawari.ftk) getNeighbours26_fromImageIndex() (in module ngawari.vtkfilters) getOutline() (in module ngawari.vtkfilters), [1] getPlaneConstantsFromPointAndVector() (in module ngawari.ftk) getPolyDataCenterPtNormal() (in module ngawari.vtkfilters) getPolyDataClippedByBox() (in module ngawari.vtkfilters), [1] getPolyDataClippedByROI() (in module ngawari.vtkfilters) getPolyDataClippedBySphere() (in module ngawari.vtkfilters), [1] getPolyDataMeanFromCenter() (in module ngawari.vtkfilters) getPolygonCenterPoint() (in module ngawari.ftk) getPolygonMeanDiameter() (in module ngawari.ftk) getPolygonMeanRadius() (in module ngawari.ftk) getPolylineLength() (in module ngawari.vtkfilters) getPtsAsNumpy() (in module ngawari.vtkfilters), [1] getResolution_VTI() (in module ngawari.vtkfilters) getScalarsArrayName() (in module ngawari.vtkfilters) getScalarsAsNumpy() (in module ngawari.vtkfilters) getTransposeIDS_and_FlipIDs_VTS2VTI() (in module ngawari.vtkfilters) getTriangleAreaAndNormal() (in module ngawari.vtkfilters) getVarValueAtI_ImageData() (in module ngawari.vtkfilters) getVectorComponentAlongRefVec() (in module ngawari.ftk) getVectorComponentAlongRefVec_Mag() (in module ngawari.ftk) getVectorComponentNormalToRefVec() (in module ngawari.ftk) getVectorsArrayName() (in module ngawari.vtkfilters) getVolumeSurfaceAreaOfPolyData() (in module ngawari.vtkfilters) getVtkPointsAsNumpy() (in module ngawari.vtkfilters) getVtsDirectionVectors() (in module ngawari.vtkfilters) getVtsOrigin() (in module ngawari.vtkfilters) getVtsResolution() (in module ngawari.vtkfilters) groupContinuousLinesByTol() (in module ngawari.ftk)

I

icp() (in module ngawari.ftk) idListToVtkIDs() (in module ngawari.vtkfilters) imageIndex_ToStructuredCoords() (in module ngawari.vtkfilters) imageStrucCoords_toIndex() (in module ngawari.vtkfilters) imageStrucCoords_toX() (in module ngawari.vtkfilters) imageX_ToStructuredCoords() (in module ngawari.vtkfilters) interpolateNANsFromSurroundingValues_cubic() (in module ngawari.ftk)

interpolateNANsFromSurroundingValues_linear() (in module ngawari.ftk) isClosedPolygonClockwise() (in module ngawari.ftk), [1] isPolyDataPolyLine() (in module ngawari.vtkfilters) isPolyDataWaterTight() (in module ngawari.vtkfilters) isVTI() (in module ngawari.vtkfilters), [1] isVTP() (in module ngawari.vtkfilters), [1] isVTS() (in module ngawari.vtkfilters), [1] iterativeClosestPointsTransform() (in module ngawari.vtkfilters)

L

lagBetweenTwoCurves() (in module ngawari.ftk) linearFit() (in module ngawari.ftk)

lineMagnitude() (in module ngawari.ftk) linerFit_RANSAC() (in module ngawari.ftk)

M

mergeSurfsByPointsInsideVti() (in module ngawari.vtkfilters) mergeTwoImageData() (in module ngawari.vtkfilters) module ngawari.fIO ngawari.ftk ngawari.vtkfilters

multiblockToList() (in module ngawari.vtkfilters)

N

ndarrayToListOfTuple3() (in module ngawari.ftk) ngawari.fIO module ngawari.ftk module

ngawari.vtkfilters module nii_to_niigz() (in module ngawari.fIO) normaliseArray() (in module ngawari.ftk), [1] NumpyEncoder (class in ngawari.fIO)

O

orderPointsConvexHull() (in module ngawari.ftk)

orderPointsConvexHull_IDs() (in module ngawari.ftk)

P

parseFileToTagsDictionary() (in module ngawari.fIO) parseJsonToDictionary() (in module ngawari.fIO) pickleData() (in module ngawari.fIO), [1] pluckerLine() (in module ngawari.ftk) pluckerSideOperator() (in module ngawari.ftk) pointCloudRemoveOutliers() (in module ngawari.vtkfilters) pointToCellData() (in module ngawari.vtkfilters), [1] poissonRecon() (in module ngawari.vtkfilters) polar2Cart() (in module ngawari.ftk) polar2z() (in module ngawari.ftk) polyfit2d() (in module ngawari.ftk) polyval2d() (in module ngawari.ftk) project3DPointsToPlanarCoordinateSystem() (in module ngawari.ftk) project3DPointsToPlanarCoordinateSystem2() (in module ngawari.ftk) project3DPointsToPlanarCoordinateSystem_OLD() (in module ngawari.ftk) projectPtsToPlane() (in module ngawari.ftk) pvdAddStartPointAtEndForPeriodicy() (in module ngawari.fIO)

pvdAddTimeToFieldData() (in module ngawari.fIO) pvdClip() (in module ngawari.fIO) pvdGetClosestTimeToT() (in module ngawari.fIO) pvdGetDataClosestTo() (in module ngawari.fIO), [1] pvdGetDataFileRoot_Prefix_and_Ext() (in module ngawari.fIO) pvdGetDict() (in module ngawari.fIO) pvdGetFileAtT() (in module ngawari.fIO) pvdGetIdOfT() (in module ngawari.fIO) pvdGetNumberTimePoints() (in module ngawari.fIO) pvdGetTimes() (in module ngawari.fIO), [1] pvdMultiply() (in module ngawari.fIO) pvdResetStartPoint() (in module ngawari.fIO) pvdResetStartPoint_Id() (in module ngawari.fIO) pvdResetTimes() (in module ngawari.fIO) pvdRestart() (in module ngawari.fIO) pvdRestart_t() (in module ngawari.fIO) pvdReverse() (in module ngawari.fIO)

R

rad2deg() (in module ngawari.ftk), [1] readDataCSV() (in module ngawari.fIO) readFileToListOfLines() (in module ngawari.fIO) readImageFileToDict() (in module ngawari.fIO) readNifti() (in module ngawari.fIO), [1] readNRRD() (in module ngawari.fIO), [1] readPVD() (in module ngawari.fIO), [1] readPVDFileName() (in module ngawari.fIO) readVTKFile() (in module ngawari.fIO), [1] reduceNumberOfPoints() (in module ngawari.vtkfilters) remove_not_allowed() (in module ngawari.fIO)

remove_symbols() (in module ngawari.fIO) renameArray() (in module ngawari.vtkfilters), [1] reorderPointsStartClosestToX() (in module ngawari.ftk) reorderPointsStatingAti() (in module ngawari.ftk) resetIndexing() (in module ngawari.vtkfilters) resetVTIIndexing() (in module ngawari.vtkfilters) resetVTSIndexing() (in module ngawari.vtkfilters) residualPlane() (in module ngawari.ftk) residualsCircle() (in module ngawari.ftk) roi_line_to_roi_plane() (in module ngawari.vtkfilters) rotateArray() (in module ngawari.ftk), [1] rotationMatrixFromThreeAngles() (in module ngawari.ftk), [1]

S

setArrayAsScalars() (in module ngawari.vtkfilters) setArrayAsVectors() (in module ngawari.vtkfilters) setArrayDtype() (in module ngawari.vtkfilters) setArrayFromNumpy() (in module ngawari.vtkfilters), [1] setFirstPtOfPolygon() (in module ngawari.ftk) setVecAConsitentWithVecB() (in module ngawari.ftk), [1] setVectorDirection() (in module ngawari.ftk) shrinkWrapData() (in module ngawari.vtkfilters) sigmoidFunction() (in module ngawari.ftk) sliceByPlane() (in module ngawari.vtkfilters) smoothTris() (in module ngawari.vtkfilters), [1]

smoothTris_SINC() (in module ngawari.vtkfilters), [1] sortedIDsOfClosestPoints() (in module ngawari.ftk) sortPointsByClosest() (in module ngawari.ftk) sortPointsByClosest_RETURNIDs() (in module ngawari.ftk) splineCurve() (in module ngawari.ftk) splineFunction() (in module ngawari.ftk) splinePoints() (in module ngawari.ftk) splineXY() (in module ngawari.ftk) squareDistPointPoints() (in module ngawari.ftk) strListToFloatList() (in module ngawari.fIO) surf2ImageBW() (in module ngawari.vtkfilters)

T

tarGZLocal_AndMove() (in module ngawari.fIO) transformImageData() (in module ngawari.vtkfilters)

transformPolydataA_to_B_ICP() (in module ngawari.vtkfilters) translatePoly_AxisA_To_AxisB() (in module ngawari.vtkfilters) tubeFilter() (in module ngawari.vtkfilters), [1]

U

unit_vector() (in module ngawari.ftk)

unpickleData() (in module ngawari.fIO), [1]

V

vecFromPtToLine() (in module ngawari.ftk) vectorMagnitudes() (in module ngawari.ftk)

vtiToVts() (in module ngawari.vtkfilters), [1] vtsToVti() (in module ngawari.vtkfilters), [1]

W

writeCSVFile() (in module ngawari.fIO) writeDictionaryToFile() (in module ngawari.fIO) writeDictionaryToJSON() (in module ngawari.fIO) writeNifti() (in module ngawari.fIO), [1]

writePlyFile() (in module ngawari.fIO), [1] writeVTK_PVD_Dict() (in module ngawari.fIO), [1] writeVTKFile() (in module ngawari.fIO), [1] writeZipFromVTK_PVD_Dict() (in module ngawari.fIO)

X

xmlIndent() (in module ngawari.fIO)

Z

z2Polar() (in module ngawari.ftk)