Index

A

AbstractSubject (class in hurahura.mi_subject) add_drives_toggle() (hurahura.miresearchui.local_directory_picker.local_file_picker method) addNewStructure() (hurahura.mi_utils.DirectoryStructureTree method)

addOtherData() (hurahura.mi_subject.AbstractSubject method) anonymise() (hurahura.mi_subject.AbstractSubject method) archiveSubject() (hurahura.mi_subject.AbstractSubject method)

B

build_page() (hurahura.miresearchui.subjectUI.SubjectPage method) buildDicomMeta() (hurahura.mi_subject.AbstractSubject method)

buildDirectoryStructureTree() (in module hurahura.mi_utils) buildSeriesDataMetaCSV() (hurahura.mi_subject.AbstractSubject method) buildSubjectID() (in module hurahura.mi_subject)

C

checkArgs() (in module hurahura.miresearch_main) chooseConfig() (hurahura.miresearchui.mainUI.MIResearchUI method) cleanup() (in module hurahura.miresearchui.miui_helpers) clearTable() (hurahura.miresearchui.mainUI.MIResearchUI method)

component (hurahura.miresearchui.local_directory_picker.local_file_picker attribute) countFilesInDir() (in module hurahura.mi_utils) countNumberOfDicoms() (hurahura.mi_subject.AbstractSubject method) createNew_OrAddTo_Subject() (in module hurahura.mi_subject)

D

datetimeToStrTime() (in module hurahura.mi_utils) decodeString() (in module hurahura.mi_utils) definePresetFromConfigfile() (in module hurahura.miresearchui.miui_helpers) delteAllButMeta() (hurahura.mi_subject.AbstractSubject method)

DirectoryStructure (class in hurahura.mi_utils) DirectoryStructureTree (class in hurahura.mi_utils) doDatesMatch() (in module hurahura.mi_subject) doesSubjectExist() (in module hurahura.mi_subject)

E

encodeString() (in module hurahura.mi_utils) error() (hurahura.miresearch_main.MiResearchParser method) execute_loadDirectory() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method)

exists() (hurahura.mi_subject.AbstractSubject method) exposed_libraries (hurahura.miresearchui.local_directory_picker.local_file_picker attribute) extra_libraries (hurahura.miresearchui.local_directory_picker.local_file_picker attribute)

F

filterSubjectListByDOS() (hurahura.mi_subject.SubjectList method) filterSubjectListByDOS_closest() (hurahura.mi_subject.SubjectList method) findDicomSeries() (hurahura.mi_subject.AbstractSubject method) findMatchingProcessingDirs() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method) findSubjMatching_SubjN() (hurahura.mi_subject.SubjectList method)

findSubjMatchingDicomStudyUID() (in module hurahura.mi_subject) findSubjMatchingName() (hurahura.mi_subject.SubjectList method) findSubjMatchingPatientID() (hurahura.mi_subject.SubjectList method) findSubjMatchingStudyID() (hurahura.mi_subject.SubjectList method) findSubjMatchingStudyUID() (hurahura.mi_subject.SubjectList method) findZeroPadding() (in module hurahura.mi_subject)

G

get_directory_modified_time() (in module hurahura.miresearch_watchdog) get_index_of_field_open() (in module hurahura.miresearchui.miui_helpers) get_ui_methods() (hurahura.mi_subject.AbstractSubject class method) getAge() (hurahura.mi_subject.AbstractSubject method) getAllSubjects() (in module hurahura.mi_subject) getAllSubjectsN() (in module hurahura.mi_subject) getDataRootDir() (in module hurahura.mi_utils) getDicomFile() (hurahura.mi_subject.AbstractSubject method) getDicomFoldersListStr() (hurahura.mi_subject.AbstractSubject method) getDicomsDir() (hurahura.mi_subject.AbstractSubject method) getDicomSeriesDir() (hurahura.mi_subject.AbstractSubject method) getDicomSeriesDir_Description() (hurahura.mi_subject.AbstractSubject method) getDicomSeriesMeta() (hurahura.mi_subject.AbstractSubject method) getDicomSeriesMetaList() (hurahura.mi_subject.AbstractSubject method) getDicomSeriesNumber_Interactive() (hurahura.mi_subject.AbstractSubject method) getDifferenceBetweenStartTimesOfTwoScans_s() (hurahura.mi_subject.AbstractSubject method) getGender() (hurahura.mi_subject.AbstractSubject method) getHRForSeriesN() (hurahura.mi_subject.AbstractSubject method) getInfoStr() (hurahura.mi_subject.AbstractSubject method) getLevelCompleted() (hurahura.mi_subject.AbstractSubject method) getListOfSeNums() (hurahura.mi_subject.AbstractSubject method) getLogger() (in module hurahura.miresearch_watchdog) getMetaDict() (hurahura.mi_subject.AbstractSubject method) getMetaDir() (hurahura.mi_subject.AbstractSubject method) getMetaTagsFile() (hurahura.mi_subject.AbstractSubject method) getMetaTagValue() (hurahura.mi_subject.AbstractSubject method)

getName() (hurahura.mi_subject.AbstractSubject method) getName_FirstNames() (hurahura.mi_subject.AbstractSubject method) getNextSubjID() (in module hurahura.mi_subject) getNextSubjN() (in module hurahura.mi_subject) getNumberFromSubjID() (in module hurahura.mi_subject) getPrefix_Number() (hurahura.mi_subject.AbstractSubject method) getRawDir() (hurahura.mi_subject.AbstractSubject method) getRawDirOther() (hurahura.mi_subject.AbstractSubject method) getSeriesDescriptionsStr() (hurahura.mi_subject.AbstractSubject method) getSeriesMetaAsDataFrame() (hurahura.mi_subject.AbstractSubject method) getSeriesMetaCSV() (hurahura.mi_subject.AbstractSubject method) getSeriesMetaValue() (hurahura.mi_subject.AbstractSubject method) getSeriesNumbersMatchingDescriptionStr() (hurahura.mi_subject.AbstractSubject method) getSpydcmDicomSeries() (hurahura.mi_subject.AbstractSubject method) getSpydcmDicomStudy() (hurahura.mi_subject.AbstractSubject method) getStartTime_EndTimeOfExam() (hurahura.mi_subject.AbstractSubject method) getStartTimeForSeriesN_HHMMSS() (hurahura.mi_subject.AbstractSubject method) getStudyDate() (hurahura.mi_subject.AbstractSubject method) getStudyID() (hurahura.mi_subject.AbstractSubject method) getSubjects() (in module hurahura.mi_subject) getSummary_list() (hurahura.mi_subject.AbstractSubject method) getTagValue() (hurahura.mi_subject.AbstractSubject method) getTimeTakenForSeriesN_s() (hurahura.mi_subject.AbstractSubject method) getTopDir() (hurahura.mi_subject.AbstractSubject method) getTotalScanTime_s() (hurahura.mi_subject.AbstractSubject method) guessSubjectPrefix() (in module hurahura.mi_subject)

H

handle_double_click() (hurahura.miresearchui.local_directory_picker.local_file_picker method) hasDicomSeries() (hurahura.mi_subject.AbstractSubject method) hurahura module hurahura.mi_config module hurahura.mi_subject module hurahura.mi_utils module hurahura.miresearch_main module hurahura.miresearch_watchdog module hurahura.miresearchui module

hurahura.miresearchui.local_directory_picker module hurahura.miresearchui.mainUI module hurahura.miresearchui.miui_helpers module hurahura.miresearchui.miui_settings_page module hurahura.miresearchui.subjectUI module hurahura.tests module hurahura.tests.context module

I

info() (hurahura.mi_subject.AbstractSubject method) infoFull() (hurahura.mi_subject.AbstractSubject method) initDirectoryStructure() (hurahura.mi_subject.AbstractSubject method) is_stable() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method)

isAnonymised() (hurahura.mi_subject.AbstractSubject method) isMale() (hurahura.mi_subject.AbstractSubject method) isSecondLevelName() (hurahura.mi_utils.DirectoryStructureTree method) isTopLevelName() (hurahura.mi_utils.DirectoryStructureTree method)

L

libraries (hurahura.miresearchui.local_directory_picker.local_file_picker attribute) load_subject() (hurahura.miresearchui.mainUI.MIResearchUI method) loadDicomsToSubject() (hurahura.mi_subject.AbstractSubject method)

loadSpydcmStudyToSubject() (hurahura.mi_subject.AbstractSubject method) local_file_picker (class in hurahura.miresearchui.local_directory_picker) logfileName (hurahura.mi_subject.AbstractSubject property) logger (hurahura.mi_subject.AbstractSubject property)

M

main() (in module hurahura.miresearch_main) matches_ignore_pattern() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method) MIResearch_SubdirectoryHandler (class in hurahura.miresearch_watchdog) MIResearch_WatchDog (class in hurahura.miresearch_watchdog) MiResearchParser (class in hurahura.miresearch_main) MIResearchUI (class in hurahura.miresearchui.mainUI) MIResearchWatchDogError miui_conf_file (hurahura.miresearchui.mainUI.MIResearchUI property) miui_conf_file_contents (hurahura.miresearchui.mainUI.MIResearchUI property) module hurahura hurahura.mi_config hurahura.mi_subject hurahura.mi_utils hurahura.miresearch_main hurahura.miresearch_watchdog hurahura.miresearchui hurahura.miresearchui.local_directory_picker hurahura.miresearchui.mainUI hurahura.miresearchui.miui_helpers hurahura.miresearchui.miui_settings_page hurahura.miresearchui.subjectUI hurahura.tests hurahura.tests.context

O

on_created() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method)

on_deleted() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method) on_moved() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method)

P

printDicomsInfo() (hurahura.mi_subject.AbstractSubject method)

R

readFileToListOfLines() (in module hurahura.mi_utils) reduceToExist() (hurahura.mi_subject.SubjectList method) reduceToSet() (hurahura.mi_subject.SubjectList method) renameSubjID() (hurahura.mi_subject.AbstractSubject method) rowToSubjID_dataRoot_classPath() (in module hurahura.miresearchui.miui_helpers)

rsyncToOtherDataroot() (hurahura.mi_subject.AbstractSubject method) run() (hurahura.miresearch_watchdog.MIResearch_WatchDog method) (hurahura.miresearchui.mainUI.UIRunner method) runActions() (in module hurahura.miresearch_main) runMIUI() (in module hurahura.miresearchui.mainUI) runPostLoadPipeLine() (hurahura.mi_subject.AbstractSubject method)

S

setByDirectory() (hurahura.mi_subject.SubjectList class method) setEncodedName() (hurahura.mi_subject.AbstractSubject method) setIsAnonymised() (hurahura.mi_subject.AbstractSubject method) setLoggerDebug() (hurahura.mi_subject.AbstractSubject method) setLoggerInfo() (hurahura.mi_subject.AbstractSubject method) setNList() (in module hurahura.miresearch_main) setPresets() (hurahura.miresearchui.mainUI.MIResearchUI method) setSubjectListFromConfigFile() (hurahura.miresearchui.mainUI.MIResearchUI method) setSubjectListFromLocalDirectory() (hurahura.miresearchui.mainUI.MIResearchUI method) setTagValue() (hurahura.mi_subject.AbstractSubject method) settings_page() (hurahura.miresearchui.mainUI.MIResearchUI method) setUpAndRun() (hurahura.miresearchui.mainUI.MIResearchUI method)

splitSubjID() (in module hurahura.mi_subject) subject_page() (in module hurahura.miresearchui.subjectUI) SubjectList (class in hurahura.mi_subject) SubjectPage (class in hurahura.miresearchui.subjectUI) subjFileToSubjN() (in module hurahura.mi_utils) subjID (hurahura.mi_subject.AbstractSubject property) subjID_dataRoot_classPathTo_SubjObj() (in module hurahura.miresearchui.miui_helpers) subjIDs (hurahura.mi_subject.SubjectList property) subjN (hurahura.mi_subject.AbstractSubject property) subjNListToSubjObj() (in module hurahura.mi_subject) subjNs (hurahura.mi_subject.SubjectList property) SubjPrefixError

T

timeToDatetime() (in module hurahura.mi_utils)

U

ui_method() (in module hurahura.mi_subject) UIRunner (class in hurahura.miresearchui.mainUI) update_drive() (hurahura.miresearchui.local_directory_picker.local_file_picker method)

update_grid() (hurahura.miresearchui.local_directory_picker.local_file_picker method) updateMetaFile() (hurahura.mi_subject.AbstractSubject method) updateTable() (hurahura.miresearchui.mainUI.MIResearchUI method)

W

writeCSVFile() (in module hurahura.mi_utils)

WriteSubjectStudySummary() (in module hurahura.mi_subject) writeSummaryCSV() (hurahura.mi_subject.SubjectList method)

Z

zipUpSubject() (hurahura.mi_subject.AbstractSubject method)