Index

A

AbstractSubject (class in hurahura.mi_subject) add_drives_toggle() (hurahura.miresearchui.local_directory_picker.local_file_picker method) addNewStructure() (hurahura.mi_utils.DirectoryStructureTree method)

addOtherData() (hurahura.mi_subject.AbstractSubject method) addPageChangeHandler() (hurahura.miresearchui.mainUI.MIResearchUI method) anonymise() (hurahura.mi_subject.AbstractSubject method) archiveSubject() (hurahura.mi_subject.AbstractSubject method)

B

build_page() (hurahura.miresearchui.subjectUI.SubjectPage method) buildDicomMeta() (hurahura.mi_subject.AbstractSubject method)

buildDirectoryStructureTree() (in module hurahura.mi_utils) buildSeriesDataMetaCSV() (hurahura.mi_subject.AbstractSubject method) buildSubjectID() (in module hurahura.mi_subject)

C

checkArgs() (in module hurahura.miresearch_main) cleanup() (in module hurahura.miresearchui.miui_helpers) clearTable() (hurahura.miresearchui.mainUI.MIResearchUI method) close() (hurahura.mi_subject.AbstractSubject method) close_logger() (hurahura.mi_subject.AbstractSubject method)

component (hurahura.miresearchui.local_directory_picker.local_file_picker attribute) countFilesInDir() (in module hurahura.mi_utils) countNumberOfDicoms() (hurahura.mi_subject.AbstractSubject method) create_settings_page() (in module hurahura.miresearchui.miui_settings_page) createNew_OrAddTo_Subject() (in module hurahura.mi_subject)

D

datetimeToStrTime() (in module hurahura.mi_utils) decodeString() (in module hurahura.mi_utils) delete_selected() (hurahura.miresearchui.mainUI.MIResearchUI method) delteAllButMeta() (hurahura.mi_subject.AbstractSubject method)

DirectoryStructure (class in hurahura.mi_utils) DirectoryStructureTree (class in hurahura.mi_utils) display_settings_page_standalone() (in module hurahura.miresearchui.miui_settings_page) doDatesMatch() (in module hurahura.mi_subject) doesSubjectExist() (in module hurahura.mi_subject)

E

encodeString() (in module hurahura.mi_utils) error() (hurahura.miresearch_main.MiResearchParser method)

execute_loadDirectory() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method) exists() (hurahura.mi_subject.AbstractSubject method) exposed_libraries (hurahura.miresearchui.local_directory_picker.local_file_picker attribute)

F

filterSubjectListByDOS() (hurahura.mi_subject.SubjectList method) filterSubjectListByDOS_closest() (hurahura.mi_subject.SubjectList method) findDicomSeries() (hurahura.mi_subject.AbstractSubject method) findMatchingProcessingDirs() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method) findSubjMatching_SubjN() (hurahura.mi_subject.SubjectList method) findSubjMatchingDicomStudyUID() (in module hurahura.mi_subject)

findSubjMatchingName() (hurahura.mi_subject.SubjectList method) findSubjMatchingPatientID() (hurahura.mi_subject.SubjectList method) findSubjMatchingStudyID() (hurahura.mi_subject.SubjectList method) findSubjMatchingStudyUID() (hurahura.mi_subject.SubjectList method) findZeroPadding() (in module hurahura.mi_subject) first_page() (hurahura.miresearchui.mainUI.MIResearchUI method)

G

get_configured_subject_class() (in module hurahura.mi_subject) get_directory_modified_time() (in module hurahura.miresearch_watchdog) get_index_of_field_open() (in module hurahura.miresearchui.miui_helpers) get_ui_methods() (hurahura.mi_subject.AbstractSubject class method) getAge() (hurahura.mi_subject.AbstractSubject method) getAllSubjects() (in module hurahura.mi_subject) getAllSubjectsN() (in module hurahura.mi_subject) getDataRootDir() (in module hurahura.mi_utils) getDicomFile() (hurahura.mi_subject.AbstractSubject method) getDicomFoldersListStr() (hurahura.mi_subject.AbstractSubject method) getDicomsDir() (hurahura.mi_subject.AbstractSubject method) getDicomSeriesDir() (hurahura.mi_subject.AbstractSubject method) getDicomSeriesDir_Description() (hurahura.mi_subject.AbstractSubject method) getDicomSeriesMeta() (hurahura.mi_subject.AbstractSubject method) getDicomSeriesMetaList() (hurahura.mi_subject.AbstractSubject method) getDicomSeriesNumber_Interactive() (hurahura.mi_subject.AbstractSubject method) getDifferenceBetweenStartTimesOfTwoScans_s() (hurahura.mi_subject.AbstractSubject method) getGender() (hurahura.mi_subject.AbstractSubject method) getHRForSeriesN() (hurahura.mi_subject.AbstractSubject method) getInfoStr() (hurahura.mi_subject.AbstractSubject method) getLevelCompleted() (hurahura.mi_subject.AbstractSubject method) getListOfSeNums() (hurahura.mi_subject.AbstractSubject method) getLogger() (in module hurahura.miresearch_watchdog) getMetaDict() (hurahura.mi_subject.AbstractSubject method) getMetaDir() (hurahura.mi_subject.AbstractSubject method) getMetaTagsFile() (hurahura.mi_subject.AbstractSubject method) getMetaTagValue() (hurahura.mi_subject.AbstractSubject method) getName() (hurahura.mi_subject.AbstractSubject method)

getName_FirstNames() (hurahura.mi_subject.AbstractSubject method) getNextSubjID() (in module hurahura.mi_subject) getNextSubjN() (in module hurahura.mi_subject) getNumberFromSubjID() (in module hurahura.mi_subject) getPaginationStats() (hurahura.miresearchui.mainUI.MIResearchUI method) getPrefix_Number() (hurahura.mi_subject.AbstractSubject method) getRawDir() (hurahura.mi_subject.AbstractSubject method) getRawDirOther() (hurahura.mi_subject.AbstractSubject method) getSeriesDescriptionsStr() (hurahura.mi_subject.AbstractSubject method) getSeriesMetaAsDataFrame() (hurahura.mi_subject.AbstractSubject method) getSeriesMetaCSV() (hurahura.mi_subject.AbstractSubject method) getSeriesMetaValue() (hurahura.mi_subject.AbstractSubject method) getSeriesNumbersMatchingDescriptionStr() (hurahura.mi_subject.AbstractSubject method) getSpydcmDicomSeries() (hurahura.mi_subject.AbstractSubject method) getSpydcmDicomStudy() (hurahura.mi_subject.AbstractSubject method) getStartTime_EndTimeOfExam() (hurahura.mi_subject.AbstractSubject method) getStartTimeForSeriesN_HHMMSS() (hurahura.mi_subject.AbstractSubject method) getStatus() (hurahura.mi_subject.AbstractSubject method) getStudyDate() (hurahura.mi_subject.AbstractSubject method) getStudyID() (hurahura.mi_subject.AbstractSubject method) getSubjects() (in module hurahura.mi_subject) getSummary_list() (hurahura.mi_subject.AbstractSubject method) getTagValue() (hurahura.mi_subject.AbstractSubject method) getTimeTakenForSeriesN_s() (hurahura.mi_subject.AbstractSubject method) getTopDir() (hurahura.mi_subject.AbstractSubject method) getTotalScanTime_s() (hurahura.mi_subject.AbstractSubject method) go_to_page() (hurahura.miresearchui.mainUI.MIResearchUI method) guessSubjectPrefix() (in module hurahura.mi_subject)

H

handle_double_click() (hurahura.miresearchui.local_directory_picker.local_file_picker method) hasDicomSeries() (hurahura.mi_subject.AbstractSubject method) home() (hurahura.miresearchui.mainUI.UIRunner static method) hurahura module hurahura.mi_config module hurahura.mi_subject module hurahura.mi_utils module hurahura.miresearch_main module hurahura.miresearch_watchdog module hurahura.miresearchui module

hurahura.miresearchui.local_directory_picker module hurahura.miresearchui.mainUI module hurahura.miresearchui.miui_helpers module hurahura.miresearchui.miui_settings_page module hurahura.miresearchui.subjectUI module hurahura.tests module hurahura.tests.context module hurahura.tests.run_tests module

I

info() (hurahura.mi_subject.AbstractSubject method) infoFull() (hurahura.mi_subject.AbstractSubject method) initDirectoryStructure() (hurahura.mi_subject.AbstractSubject method) initialize_settings_ui() (in module hurahura.miresearchui.miui_settings_page)

is_stable() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method) isAnonymised() (hurahura.mi_subject.AbstractSubject method) isMale() (hurahura.mi_subject.AbstractSubject method) isSecondLevelName() (hurahura.mi_utils.DirectoryStructureTree method) isTopLevelName() (hurahura.mi_utils.DirectoryStructureTree method)

L

last_page() (hurahura.miresearchui.mainUI.MIResearchUI method) load_subject() (hurahura.miresearchui.mainUI.MIResearchUI method) loadDicomsToSubject() (hurahura.mi_subject.AbstractSubject method) loadPage() (hurahura.miresearchui.mainUI.MIResearchUI method)

loadSpydcmStudyToSubject() (hurahura.mi_subject.AbstractSubject method) local_file_picker (class in hurahura.miresearchui.local_directory_picker) logfileName (hurahura.mi_subject.AbstractSubject property) logger (hurahura.mi_subject.AbstractSubject property)

M

main() (in module hurahura.miresearch_main) matches_ignore_pattern() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method) MIResearch_SubdirectoryHandler (class in hurahura.miresearch_watchdog) MIResearch_WatchDog (class in hurahura.miresearch_watchdog) MiResearchParser (class in hurahura.miresearch_main) MIResearchUI (class in hurahura.miresearchui.mainUI) MIResearchWatchDogError module hurahura hurahura.mi_config hurahura.mi_subject hurahura.mi_utils hurahura.miresearch_main hurahura.miresearch_watchdog hurahura.miresearchui hurahura.miresearchui.local_directory_picker hurahura.miresearchui.mainUI hurahura.miresearchui.miui_helpers hurahura.miresearchui.miui_settings_page hurahura.miresearchui.subjectUI hurahura.tests hurahura.tests.context hurahura.tests.run_tests

N

next_page() (hurahura.miresearchui.mainUI.MIResearchUI method)

O

on_created() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method) on_deleted() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method)

on_moved() (hurahura.miresearch_watchdog.MIResearch_SubdirectoryHandler method) onPageChanged() (hurahura.miresearchui.mainUI.MIResearchUI method)

P

prev_page() (hurahura.miresearchui.mainUI.MIResearchUI method)

printDicomsInfo() (hurahura.mi_subject.AbstractSubject method)

R

readFileToListOfLines() (in module hurahura.mi_utils) reduceToExist() (hurahura.mi_subject.SubjectList method) reduceToSet() (hurahura.mi_subject.SubjectList method) refresh() (hurahura.miresearchui.mainUI.MIResearchUI method) renameSubjID() (hurahura.mi_subject.AbstractSubject method) ROWS_PER_PAGE (hurahura.miresearchui.mainUI.MIResearchUI attribute)

rsyncToOtherDataroot() (hurahura.mi_subject.AbstractSubject method) run() (hurahura.miresearch_watchdog.MIResearch_WatchDog method) (hurahura.miresearchui.mainUI.UIRunner static method) runActions() (in module hurahura.miresearch_main) runMIUI() (in module hurahura.miresearchui.mainUI) runPostLoadPipeLine() (hurahura.mi_subject.AbstractSubject method)

S

setByDirectory() (hurahura.mi_subject.SubjectList class method) setBySNList() (hurahura.mi_subject.SubjectList class method) setDEBUGMode() (hurahura.mi_subject.AbstractSubject method) setEncodedName() (hurahura.mi_subject.AbstractSubject method) setIsAnonymised() (hurahura.mi_subject.AbstractSubject method) setLoggerDebug() (hurahura.mi_subject.AbstractSubject method) setLoggerInfo() (hurahura.mi_subject.AbstractSubject method) setNList() (in module hurahura.miresearch_main) setSubjectList() (hurahura.miresearchui.mainUI.MIResearchUI method) setTagValue() (hurahura.mi_subject.AbstractSubject method) setUpAndRun() (hurahura.miresearchui.mainUI.MIResearchUI method) setUpClass() (hurahura.tests.run_tests.TestArchiveSubject class method) (hurahura.tests.run_tests.TestMoveSubject class method) (hurahura.tests.run_tests.TestRenameSubject class method) (hurahura.tests.run_tests.TestSubject class method) (hurahura.tests.run_tests.TestSubject2 class method) (hurahura.tests.run_tests.TestSubject2b class method) (hurahura.tests.run_tests.TestSubject3 class method) (hurahura.tests.run_tests.TestSubject4 class method) (hurahura.tests.run_tests.TestSubjectAnonName class method) (hurahura.tests.run_tests.TestSubjectAnonName2 class method) (hurahura.tests.run_tests.TestSubjectAnonName3 class method) (hurahura.tests.run_tests.TestSubjectAnonName4 class method) (hurahura.tests.run_tests.TestSubjectAnonName5 class method) (hurahura.tests.run_tests.TestSubjectRename class method) (hurahura.tests.run_tests.TestSubjects class method) (hurahura.tests.run_tests.TestSubjects2 class method) (hurahura.tests.run_tests.TestSubjects3 class method) (hurahura.tests.run_tests.TestSubjectUseConfFile class method)

shutdown() (hurahura.miresearchui.mainUI.MIResearchUI method) splitSubjID() (in module hurahura.mi_subject) subject_page() (in module hurahura.miresearchui.subjectUI) SubjectList (class in hurahura.mi_subject) SubjectPage (class in hurahura.miresearchui.subjectUI) subjFileToSubjN() (in module hurahura.mi_utils) subjID (hurahura.mi_subject.AbstractSubject property) subjIDs (hurahura.mi_subject.SubjectList property) subjN (hurahura.mi_subject.AbstractSubject property) subjNListToSubjObj() (in module hurahura.mi_subject) subjNs (hurahura.mi_subject.SubjectList property) SubjPrefixError

T

tearDownClass() (hurahura.tests.run_tests.TestArchiveSubject class method) (hurahura.tests.run_tests.TestMoveSubject class method) (hurahura.tests.run_tests.TestRenameSubject class method) (hurahura.tests.run_tests.TestSubject class method) (hurahura.tests.run_tests.TestSubject2 class method) (hurahura.tests.run_tests.TestSubject2b class method) (hurahura.tests.run_tests.TestSubject3 class method) (hurahura.tests.run_tests.TestSubject4 class method) (hurahura.tests.run_tests.TestSubjectAnonName class method) (hurahura.tests.run_tests.TestSubjectAnonName2 class method) (hurahura.tests.run_tests.TestSubjectAnonName3 class method) (hurahura.tests.run_tests.TestSubjectAnonName4 class method) (hurahura.tests.run_tests.TestSubjectAnonName5 class method) (hurahura.tests.run_tests.TestSubjectRename class method) (hurahura.tests.run_tests.TestSubjects class method) (hurahura.tests.run_tests.TestSubjects2 class method) (hurahura.tests.run_tests.TestSubjects3 class method) (hurahura.tests.run_tests.TestSubjectUseConfFile class method) test_filterList() (hurahura.tests.run_tests.TestSubjects method) (hurahura.tests.run_tests.TestSubjects2 method) test_List() (hurahura.tests.run_tests.TestSubjects method) (hurahura.tests.run_tests.TestSubjects2 method) test_N() (hurahura.tests.run_tests.TestSubject2b method) test_newSubj() (hurahura.tests.run_tests.TestSubject method) (hurahura.tests.run_tests.TestSubject2 method) (hurahura.tests.run_tests.TestSubject2b method) (hurahura.tests.run_tests.TestSubject3 method) (hurahura.tests.run_tests.TestSubject4 method) (hurahura.tests.run_tests.TestSubjectAnonName method) (hurahura.tests.run_tests.TestSubjectAnonName2 method) (hurahura.tests.run_tests.TestSubjectAnonName3 method) (hurahura.tests.run_tests.TestSubjectAnonName4 method) (hurahura.tests.run_tests.TestSubjectAnonName5 method) (hurahura.tests.run_tests.TestSubjectRename method) (hurahura.tests.run_tests.TestSubjectUseConfFile method)

test_newSubjs() (hurahura.tests.run_tests.TestSubjects method) (hurahura.tests.run_tests.TestSubjects2 method) (hurahura.tests.run_tests.TestSubjects3 method) test_SubjRename() (hurahura.tests.run_tests.TestRenameSubject method) test_SubjZip() (hurahura.tests.run_tests.TestArchiveSubject method) (hurahura.tests.run_tests.TestMoveSubject method) TestArchiveSubject (class in hurahura.tests.run_tests) TestMoveSubject (class in hurahura.tests.run_tests) TestRenameSubject (class in hurahura.tests.run_tests) TestSubject (class in hurahura.tests.run_tests) TestSubject2 (class in hurahura.tests.run_tests) TestSubject2b (class in hurahura.tests.run_tests) TestSubject3 (class in hurahura.tests.run_tests) TestSubject4 (class in hurahura.tests.run_tests) TestSubjectAnonName (class in hurahura.tests.run_tests) TestSubjectAnonName2 (class in hurahura.tests.run_tests) TestSubjectAnonName3 (class in hurahura.tests.run_tests) TestSubjectAnonName4 (class in hurahura.tests.run_tests) TestSubjectAnonName5 (class in hurahura.tests.run_tests) TestSubjectRename (class in hurahura.tests.run_tests) TestSubjects (class in hurahura.tests.run_tests) TestSubjects2 (class in hurahura.tests.run_tests) TestSubjects3 (class in hurahura.tests.run_tests) TestSubjectUseConfFile (class in hurahura.tests.run_tests) timeToDatetime() (in module hurahura.mi_utils)

U

ui_method() (in module hurahura.mi_subject) UIRunner (class in hurahura.miresearchui.mainUI) update_drive() (hurahura.miresearchui.local_directory_picker.local_file_picker method) update_grid() (hurahura.miresearchui.local_directory_picker.local_file_picker method)

update_page_display() (hurahura.miresearchui.mainUI.MIResearchUI method) updateDataRoot() (hurahura.miresearchui.mainUI.MIResearchUI method) updateMetaFile() (hurahura.mi_subject.AbstractSubject method) updateSubjectPrefix() (hurahura.miresearchui.mainUI.MIResearchUI method) updateTable() (hurahura.miresearchui.mainUI.MIResearchUI method)

W

writeCSVFile() (in module hurahura.mi_utils)

WriteSubjectStudySummary() (in module hurahura.mi_subject) writeSummaryCSV() (hurahura.mi_subject.SubjectList method)

Z

zipUpSubject() (hurahura.mi_subject.AbstractSubject method)